Add domain CRUD, energy density constraint, LLM status, reset results, score display fixes

Domain management:
- Add domain list/detail/form templates and full CRUD routes (domains.py)
- Add metric bound add/edit/delete via HTMX partials (_metrics_table.html)

Energy density constraint (Rule 6 in ConstraintResolver):
- Hard-block combos where power source provides <25% of platform's required Wh/kg
- Warn (conditional) when under-density but within 4x
- Solar Sail exempt (no stored energy); Airplane requires 400 Wh/kg, Spaceship 2000 Wh/kg
- Add energy_density_wh_kg provides to all 8 stored-energy power sources in seed data
- 3 new constraint resolver tests

LLM-complete status:
- Pipeline Pass 4 now sets combo status to llm_reviewed after successful LLM review
- update_combination_status guards against downgrading: scored won't overwrite
  llm_reviewed or reviewed; llm_reviewed won't overwrite reviewed
- Add badge-llm_reviewed CSS style (light blue)

Reset results:
- Repository.reset_domain_results() deletes combination_results, combination_scores,
  and pipeline_runs for a domain; pipeline re-evaluates on next run
- POST /results/<domain>/reset route with flash confirmation
- "Reset results" danger button with JS confirm dialog in results list

Fix composite score 0 displaying as --- (Jinja2 falsy 0.0 bug):
- Change `if r.composite_score` to `if r.composite_score is not none`

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

.gitignore

@@ -177,3 +177,4 @@ cython_debug/
 # Project data
 data/
 
+.aider*

src/physcom/db/repository.py

@@ -125,8 +125,20 @@ class Repository:
         self.conn.commit()
 
     def delete_entity(self, entity_id: int) -> None:
+        combo_ids = [
+            r["combination_id"]
+            for r in self.conn.execute(
+                "SELECT combination_id FROM combination_entities WHERE entity_id = ?",
+                (entity_id,),
+            ).fetchall()
+        ]
+        if combo_ids:
+            ph = ",".join("?" * len(combo_ids))
+            self.conn.execute(f"DELETE FROM combination_results WHERE combination_id IN ({ph})", combo_ids)
+            self.conn.execute(f"DELETE FROM combination_scores WHERE combination_id IN ({ph})", combo_ids)
+            self.conn.execute(f"DELETE FROM combination_entities WHERE combination_id IN ({ph})", combo_ids)
+            self.conn.execute(f"DELETE FROM combinations WHERE id IN ({ph})", combo_ids)
         self.conn.execute("DELETE FROM dependencies WHERE entity_id = ?", (entity_id,))
-        self.conn.execute("DELETE FROM combination_entities WHERE entity_id = ?", (entity_id,))
         self.conn.execute("DELETE FROM entities WHERE id = ?", (entity_id,))
         self.conn.commit()
 
@@ -228,6 +240,99 @@ class Repository:
         rows = self.conn.execute("SELECT name FROM domains ORDER BY name").fetchall()
         return [self.get_domain(r["name"]) for r in rows]
 
+    def get_domain_by_id(self, domain_id: int) -> Domain | None:
+        row = self.conn.execute("SELECT * FROM domains WHERE id = ?", (domain_id,)).fetchone()
+        if not row:
+            return None
+        weights = self.conn.execute(
+            """SELECT m.name, m.unit, dmw.weight, dmw.norm_min, dmw.norm_max, dmw.metric_id
+               FROM domain_metric_weights dmw
+               JOIN metrics m ON dmw.metric_id = m.id
+               WHERE dmw.domain_id = ?""",
+            (row["id"],),
+        ).fetchall()
+        return Domain(
+            id=row["id"],
+            name=row["name"],
+            description=row["description"] or "",
+            metric_bounds=[
+                MetricBound(
+                    metric_name=w["name"], weight=w["weight"],
+                    norm_min=w["norm_min"], norm_max=w["norm_max"],
+                    metric_id=w["metric_id"], unit=w["unit"] or "",
+                )
+                for w in weights
+            ],
+        )
+
+    def update_domain(self, domain_id: int, name: str, description: str) -> None:
+        self.conn.execute(
+            "UPDATE domains SET name = ?, description = ? WHERE id = ?",
+            (name, description, domain_id),
+        )
+        self.conn.commit()
+
+    def add_metric_bound(self, domain_id: int, mb: MetricBound) -> MetricBound:
+        metric_id = self.ensure_metric(mb.metric_name, mb.unit)
+        mb.metric_id = metric_id
+        self.conn.execute(
+            """INSERT OR REPLACE INTO domain_metric_weights
+               (domain_id, metric_id, weight, norm_min, norm_max)
+               VALUES (?, ?, ?, ?, ?)""",
+            (domain_id, metric_id, mb.weight, mb.norm_min, mb.norm_max),
+        )
+        self.conn.commit()
+        return mb
+
+    def update_metric_bound(
+        self, domain_id: int, metric_id: int, weight: float, norm_min: float, norm_max: float, unit: str
+    ) -> None:
+        self.conn.execute(
+            """UPDATE domain_metric_weights
+               SET weight = ?, norm_min = ?, norm_max = ?
+               WHERE domain_id = ? AND metric_id = ?""",
+            (weight, norm_min, norm_max, domain_id, metric_id),
+        )
+        if unit:
+            self.conn.execute(
+                "UPDATE metrics SET unit = ? WHERE id = ?",
+                (unit, metric_id),
+            )
+        self.conn.commit()
+
+    def delete_metric_bound(self, domain_id: int, metric_id: int) -> None:
+        self.conn.execute(
+            "DELETE FROM domain_metric_weights WHERE domain_id = ? AND metric_id = ?",
+            (domain_id, metric_id),
+        )
+        self.conn.commit()
+
+    def delete_domain(self, domain_id: int) -> None:
+        self.conn.execute("DELETE FROM pipeline_runs WHERE domain_id = ?", (domain_id,))
+        self.conn.execute("DELETE FROM combination_results WHERE domain_id = ?", (domain_id,))
+        self.conn.execute("DELETE FROM combination_scores WHERE domain_id = ?", (domain_id,))
+        self.conn.execute("DELETE FROM domain_metric_weights WHERE domain_id = ?", (domain_id,))
+        self.conn.execute("DELETE FROM domains WHERE id = ?", (domain_id,))
+        self.conn.commit()
+
+    def reset_domain_results(self, domain_name: str) -> int:
+        """Delete all pipeline results for a domain so it can be re-run from scratch.
+
+        Returns the number of result rows deleted.
+        """
+        domain = self.get_domain(domain_name)
+        if not domain:
+            return 0
+        count = self.conn.execute(
+            "SELECT COUNT(*) FROM combination_results WHERE domain_id = ?",
+            (domain.id,),
+        ).fetchone()[0]
+        self.conn.execute("DELETE FROM combination_scores WHERE domain_id = ?", (domain.id,))
+        self.conn.execute("DELETE FROM combination_results WHERE domain_id = ?", (domain.id,))
+        self.conn.execute("DELETE FROM pipeline_runs WHERE domain_id = ?", (domain.id,))
+        self.conn.commit()
+        return count
+
     # ── Combinations ────────────────────────────────────────────
 
     @staticmethod
@@ -265,12 +370,16 @@ class Repository:
     def update_combination_status(
         self, combo_id: int, status: str, block_reason: str | None = None
     ) -> None:
-        # Don't downgrade 'reviewed' to 'scored' — preserve human review state
+        # Don't downgrade from higher pass states — preserves human/LLM review data
-        if status == "scored":
+        if status in ("scored", "llm_reviewed"):
             row = self.conn.execute(
                 "SELECT status FROM combinations WHERE id = ?", (combo_id,)
             ).fetchone()
-            if row and row["status"] == "reviewed":
+            if row:
+                cur = row["status"]
+                if status == "scored" and cur in ("llm_reviewed", "reviewed"):
+                    return
+                if status == "llm_reviewed" and cur == "reviewed":
                     return
         self.conn.execute(
             "UPDATE combinations SET status = ?, block_reason = ? WHERE id = ?",
@@ -292,6 +401,60 @@ class Repository:
             block_reason=row["block_reason"], entities=entities,
         )
 
+    def _bulk_load_combinations(self, combo_ids: list[int]) -> dict[int, Combination]:
+        """Load multiple Combinations in O(4) queries instead of O(N*M)."""
+        if not combo_ids:
+            return {}
+        ph = ",".join("?" * len(combo_ids))
+        combo_rows = self.conn.execute(
+            f"SELECT * FROM combinations WHERE id IN ({ph})", combo_ids
+        ).fetchall()
+        combos: dict[int, Combination] = {
+            r["id"]: Combination(
+                id=r["id"], hash=r["hash"], status=r["status"],
+                block_reason=r["block_reason"], entities=[],
+            )
+            for r in combo_rows
+        }
+        ce_rows = self.conn.execute(
+            f"SELECT combination_id, entity_id FROM combination_entities WHERE combination_id IN ({ph})",
+            combo_ids,
+        ).fetchall()
+        combo_to_eids: dict[int, list[int]] = {}
+        for r in ce_rows:
+            combo_to_eids.setdefault(r["combination_id"], []).append(r["entity_id"])
+
+        entity_ids = list({r["entity_id"] for r in ce_rows})
+        if entity_ids:
+            eph = ",".join("?" * len(entity_ids))
+            entity_rows = self.conn.execute(
+                f"""SELECT e.id, e.name, e.description, d.name as dimension, e.dimension_id
+                    FROM entities e JOIN dimensions d ON e.dimension_id = d.id
+                    WHERE e.id IN ({eph})""",
+                entity_ids,
+            ).fetchall()
+            dep_rows = self.conn.execute(
+                f"SELECT * FROM dependencies WHERE entity_id IN ({eph})", entity_ids
+            ).fetchall()
+            deps_by_entity: dict[int, list[Dependency]] = {}
+            for r in dep_rows:
+                deps_by_entity.setdefault(r["entity_id"], []).append(Dependency(
+                    id=r["id"], category=r["category"], key=r["key"],
+                    value=r["value"], unit=r["unit"], constraint_type=r["constraint_type"],
+                ))
+            entities_by_id: dict[int, Entity] = {
+                r["id"]: Entity(
+                    id=r["id"], name=r["name"], description=r["description"] or "",
+                    dimension=r["dimension"], dimension_id=r["dimension_id"],
+                    dependencies=deps_by_entity.get(r["id"], []),
+                )
+                for r in entity_rows
+            }
+            for cid, eids in combo_to_eids.items():
+                if cid in combos:
+                    combos[cid].entities = [entities_by_id[eid] for eid in eids if eid in entities_by_id]
+        return combos
+
     def list_combinations(self, status: str | None = None) -> list[Combination]:
         if status:
             rows = self.conn.execute(
@@ -299,7 +462,9 @@ class Repository:
             ).fetchall()
         else:
             rows = self.conn.execute("SELECT id FROM combinations ORDER BY id").fetchall()
-        return [self.get_combination(r["id"]) for r in rows]
+        ids = [r["id"] for r in rows]
+        combos = self._bulk_load_combinations(ids)
+        return [combos[i] for i in ids if i in combos]
 
     # ── Scores & Results ────────────────────────────────────────
 
@@ -385,9 +550,13 @@ class Repository:
         ).fetchone()
         if not row or row["total"] == 0:
             return None
-        # Also count blocked combos (they have no results but exist)
         blocked = self.conn.execute(
-            "SELECT COUNT(*) as cnt FROM combinations WHERE status = 'blocked'"
+            """SELECT COUNT(*) as cnt
+               FROM combinations c
+               JOIN combination_results cr ON cr.combination_id = c.id
+               JOIN domains d ON cr.domain_id = d.id
+               WHERE c.status = 'blocked' AND d.name = ?""",
+            (domain_name,),
         ).fetchone()
         return {
             "total_results": row["total"],
@@ -422,19 +591,20 @@ class Repository:
             params.append(status)
         query += " ORDER BY cr.composite_score DESC"
         rows = self.conn.execute(query, params).fetchall()
-        results = []
+        combo_ids = [r["combination_id"] for r in rows]
-        for r in rows:
+        combos = self._bulk_load_combinations(combo_ids)
-            combo = self.get_combination(r["combination_id"])
+        return [
-            results.append({
+            {
-                "combination": combo,
+                "combination": combos.get(r["combination_id"]),
                 "composite_score": r["composite_score"],
                 "novelty_flag": r["novelty_flag"],
                 "llm_review": r["llm_review"],
                 "human_notes": r["human_notes"],
                 "pass_reached": r["pass_reached"],
                 "domain_id": r["domain_id"],
-            })
+            }
-        return results
+            for r in rows
+        ]
 
     def get_top_results(self, domain_name: str, limit: int = 10) -> list[dict]:
         """Return top-N results for a domain, ordered by composite_score DESC."""
@@ -448,18 +618,30 @@ class Repository:
                LIMIT ?""",
             (domain_name, limit),
         ).fetchall()
-        results = []
+        combo_ids = [r["combination_id"] for r in rows]
-        for r in rows:
+        combos = self._bulk_load_combinations(combo_ids)
-            combo = self.get_combination(r["combination_id"])
+        return [
-            results.append({
+            {
-                "combination": combo,
+                "combination": combos.get(r["combination_id"]),
                 "composite_score": r["composite_score"],
                 "novelty_flag": r["novelty_flag"],
                 "llm_review": r["llm_review"],
                 "human_notes": r["human_notes"],
                 "pass_reached": r["pass_reached"],
-            })
+            }
-        return results
+            for r in rows
+        ]
+
+    def get_results_for_combination(self, combo_id: int) -> list[dict]:
+        """Return all domain results for a combination."""
+        rows = self.conn.execute(
+            """SELECT cr.*, d.name as domain_name
+               FROM combination_results cr
+               JOIN domains d ON cr.domain_id = d.id
+               WHERE cr.combination_id = ?""",
+            (combo_id,),
+        ).fetchall()
+        return [dict(r) for r in rows]
 
     # ── Pipeline Runs ────────────────────────────────────────
 
@@ -473,10 +655,19 @@ class Repository:
         self.conn.commit()
         return cur.lastrowid
 
+    _PIPELINE_RUN_UPDATABLE = frozenset({
+        "status", "total_combos", "combos_pass1", "combos_pass2",
+        "combos_pass3", "combos_pass4", "current_pass",
+        "error_message", "started_at", "completed_at",
+    })
+
     def update_pipeline_run(self, run_id: int, **fields) -> None:
-        """Update arbitrary fields on a pipeline_run."""
+        """Update fields on a pipeline_run. Only allowlisted column names are accepted."""
         if not fields:
             return
+        invalid = set(fields) - self._PIPELINE_RUN_UPDATABLE
+        if invalid:
+            raise ValueError(f"Invalid pipeline_run fields: {invalid}")
         set_clause = ", ".join(f"{k} = ?" for k in fields)
         values = list(fields.values())
         values.append(run_id)

src/physcom/engine/constraint_resolver.py

@@ -42,6 +42,7 @@ class ConstraintResolver:
         self._check_mutual_exclusion(all_deps, result)
         self._check_range_incompatibility(all_deps, result)
         self._check_force_scale(combination, result)
+        self._check_energy_density(combination, result)
         self._check_unmet_requirements(all_deps, result)
 
         if result.violations:
@@ -155,6 +156,40 @@ class ConstraintResolver:
                         f"(under-powered)"
                     )
 
+    def _check_energy_density(
+        self, combination: Combination, result: ConstraintResult
+    ) -> None:
+        """Rule 6: If power source energy density << platform minimum → warn/block.
+
+        Uses a 25% threshold: below 25% of required → hard block (> 4x deficit).
+        """
+        density_provided: list[tuple[str, float]] = []
+        density_required: list[tuple[str, float]] = []
+
+        for entity in combination.entities:
+            for dep in entity.dependencies:
+                if dep.key == "energy_density_wh_kg" and dep.constraint_type == "provides":
+                    density_provided.append((entity.name, float(dep.value)))
+                elif dep.key == "energy_density_wh_kg" and dep.constraint_type == "range_min":
+                    density_required.append((entity.name, float(dep.value)))
+
+        for req_name, req_density in density_required:
+            if not density_provided:
+                continue  # No stored energy source in this combo — skip check
+            for prov_name, prov_density in density_provided:
+                if prov_density < req_density * 0.25:
+                    result.violations.append(
+                        f"{prov_name} provides {prov_density:.0f} Wh/kg but "
+                        f"{req_name} requires {req_density:.0f} Wh/kg "
+                        f"(energy density deficit > 4x)"
+                    )
+                elif prov_density < req_density:
+                    result.warnings.append(
+                        f"{prov_name} provides {prov_density:.0f} Wh/kg but "
+                        f"{req_name} requires {req_density:.0f} Wh/kg "
+                        f"(under-density)"
+                    )
+
     def _check_unmet_requirements(
         self, all_deps: list[tuple[str, Dependency]], result: ConstraintResult
     ) -> None:

src/physcom/engine/pipeline.py

@@ -2,6 +2,7 @@
 
 from __future__ import annotations
 
+import time
 from dataclasses import dataclass, field
 from datetime import datetime, timezone
 
@@ -293,9 +294,20 @@ class Pipeline:
                                 for s in db_scores
                                 if s["normalized_score"] is not None
                             }
+                            review: str | None = None
+                            try:
                                 review = self.llm.review_plausibility(
                                     description, score_dict
                                 )
+                            except LLMRateLimitError as exc:
+                                self._wait_for_rate_limit(run_id, exc.retry_after)
+                                try:
+                                    review = self.llm.review_plausibility(
+                                        description, score_dict
+                                    )
+                                except LLMRateLimitError:
+                                    pass  # still limited; skip, retry next run
+                            if review is not None:
                                 self.repo.save_result(
                                     combo.id,
                                     domain.id,
@@ -305,6 +317,9 @@ class Pipeline:
                                     llm_review=review,
                                     human_notes=cur_result.get("human_notes"),
                                 )
+                                self.repo.update_combination_status(
+                                    combo.id, "llm_reviewed"
+                                )
                                 result.pass4_reviewed += 1
                                 self._update_run_counters(
                                     run_id, result, current_pass=4
@@ -319,17 +334,6 @@ class Pipeline:
                 )
             result.top_results = self.repo.get_top_results(domain.name, limit=20)
             return result
-        except LLMRateLimitError:
-            # Rate limit hit — save progress and let the user re-run to continue.
-            # Already-reviewed combos are persisted; resumability skips them next time.
-            if run_id is not None:
-                self.repo.update_pipeline_run(
-                    run_id,
-                    status="completed",
-                    completed_at=datetime.now(timezone.utc).isoformat(),
-                )
-            result.top_results = self.repo.get_top_results(domain.name, limit=20)
-            return result
 
         # Mark run as completed
         if run_id is not None:
@@ -342,6 +346,18 @@ class Pipeline:
         result.top_results = self.repo.get_top_results(domain.name, limit=20)
         return result
 
+    def _wait_for_rate_limit(self, run_id: int | None, retry_after: int) -> None:
+        """Mark run rate_limited, sleep with cancel checks, then resume."""
+        if run_id is not None:
+            self.repo.update_pipeline_run(run_id, status="rate_limited")
+        waited = 0
+        while waited < retry_after:
+            time.sleep(5)
+            waited += 5
+            self._check_cancelled(run_id)
+        if run_id is not None:
+            self.repo.update_pipeline_run(run_id, status="running")
+
     def _stub_estimate(
         self, combo: Combination, metric_names: list[str]
     ) -> dict[str, float]:

src/physcom/llm/base.py

@@ -8,10 +8,14 @@ from abc import ABC, abstractmethod
 class LLMRateLimitError(Exception):
     """Raised by a provider when the API rate limit is exceeded.
 
-    The pipeline catches this to stop gracefully and let the user re-run
+    The pipeline catches this, waits retry_after seconds (checking for
-    to continue from where it left off.
+    cancellation), then retries. retry_after defaults to 65s if unknown.
     """
 
+    def __init__(self, message: str, retry_after: int = 65) -> None:
+        super().__init__(message)
+        self.retry_after = retry_after
+
 
 class LLMProvider(ABC):
     """Abstract LLM interface for physics estimation and plausibility review."""

src/physcom/llm/providers/gemini.py

@@ -4,6 +4,7 @@ from __future__ import annotations
 
 import json
 import re
+import math
 
 from physcom.llm.base import LLMProvider, LLMRateLimitError
 from physcom.llm.prompts import PHYSICS_ESTIMATION_PROMPT, PLAUSIBILITY_REVIEW_PROMPT
@@ -35,7 +36,7 @@ class GeminiLLMProvider(LLMProvider):
             )
         except Exception as exc:
             if "429" in str(exc) or "RESOURCE_EXHAUSTED" in str(exc):
-                raise LLMRateLimitError(str(exc)) from exc
+                raise LLMRateLimitError(str(exc), self._parse_retry_after(exc)) from exc
             raise
         return self._parse_json(response.text, metrics)
 
@@ -53,10 +54,15 @@ class GeminiLLMProvider(LLMProvider):
             )
         except Exception as exc:
             if "429" in str(exc) or "RESOURCE_EXHAUSTED" in str(exc):
-                raise LLMRateLimitError(str(exc)) from exc
+                raise LLMRateLimitError(str(exc), self._parse_retry_after(exc)) from exc
             raise
         return response.text.strip()
 
+    def _parse_retry_after(self, exc: Exception) -> int:
+        """Extract retry delay from the error message, with a safe default."""
+        m = re.search(r"retry in (\d+(?:\.\d+)?)", str(exc))
+        return math.ceil(float(m.group(1))) + 5 if m else 65
+
     def _parse_json(self, text: str, metrics: list[str]) -> dict[str, float]:
         """Strip markdown fences and parse JSON; fall back to 0.5 per metric on error."""
         text = re.sub(r"```(?:json)?\s*", "", text).strip().rstrip("`").strip()

src/physcom/seed/transport_example.py

@@ -34,6 +34,7 @@ PLATFORMS: list[Entity] = [
             Dependency("force", "force_required_watts", "100000", "watts", "range_min"),
             Dependency("infrastructure", "runway", "true", None, "requires"),
             Dependency("environment", "medium", "air", None, "requires"),
+            Dependency("physical", "energy_density_wh_kg", "400", "Wh/kg", "range_min"),
         ],
     ),
     Entity(
@@ -111,6 +112,7 @@ PLATFORMS: list[Entity] = [
             Dependency("force", "force_required_watts", "1000000", "watts", "range_min"),
             Dependency("infrastructure", "launch_facility", "true", None, "requires"),
             Dependency("environment", "medium", "space", None, "requires"),
+            Dependency("physical", "energy_density_wh_kg", "2000", "Wh/kg", "range_min"),
         ],
     ),
     Entity(
@@ -139,6 +141,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("environment", "atmosphere", "standard", None, "requires"),
             Dependency("physical", "mass_kg", "50", "kg", "range_min"),
             Dependency("force", "thrust_profile", "high_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "1500", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -150,6 +153,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("infrastructure", "fuel_infrastructure", "charging_station", None, "requires"),
             Dependency("physical", "mass_kg", "10", "kg", "range_min"),
             Dependency("force", "thrust_profile", "moderate_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -161,6 +165,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("infrastructure", "fuel_infrastructure", "hydrogen_station", None, "requires"),
             Dependency("physical", "mass_kg", "30", "kg", "range_min"),
             Dependency("force", "thrust_profile", "high_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "600", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -172,6 +177,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("infrastructure", "fuel_infrastructure", "none", None, "requires"),
             Dependency("physical", "mass_kg", "0", "kg", "range_min"),
             Dependency("force", "thrust_profile", "low_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -184,6 +190,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("physical", "mass_kg", "2000", "kg", "range_min"),
             Dependency("force", "thrust_profile", "extreme_continuous", None, "provides"),
             Dependency("material", "radiation_shielding", "true", None, "requires"),
+            Dependency("physical", "energy_density_wh_kg", "500000", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -196,6 +203,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("environment", "atmosphere", "standard", None, "requires"),
             Dependency("physical", "mass_kg", "500", "kg", "range_min"),
             Dependency("force", "thrust_profile", "high_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "400", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -220,6 +228,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("infrastructure", "fuel_infrastructure", "ammunition", None, "requires"),
             Dependency("physical", "mass_kg", "100", "kg", "range_min"),
             Dependency("force", "thrust_profile", "high_burst", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
         ],
     ),
     Entity(
@@ -232,6 +241,7 @@ POWER_SOURCES: list[Entity] = [
             Dependency("physical", "mass_kg", "0", "kg", "range_min"),
             Dependency("environment", "ground_surface", "true", None, "requires"),
             Dependency("force", "thrust_profile", "low_continuous", None, "provides"),
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
         ],
     ),
 ]

src/physcom_web/app.py

@@ -3,6 +3,7 @@
 from __future__ import annotations
 
 import os
+import secrets
 from pathlib import Path
 
 from flask import Flask, g
@@ -12,6 +13,29 @@ from physcom.db.repository import Repository
 
 
 DEFAULT_DB = Path("data/physcom.db")
+_ENV_FILE = Path(".env")
+
+
+def _load_or_generate_secret_key() -> str:
+    """Return FLASK_SECRET_KEY from env, .env file, or auto-generate and persist it."""
+    key = os.environ.get("FLASK_SECRET_KEY", "").strip()
+    if key:
+        return key
+
+    # Try to load from .env
+    if _ENV_FILE.exists():
+        for line in _ENV_FILE.read_text().splitlines():
+            line = line.strip()
+            if line.startswith("FLASK_SECRET_KEY="):
+                key = line[len("FLASK_SECRET_KEY="):].strip()
+                if key:
+                    return key
+
+    # Generate, persist, and return
+    key = secrets.token_hex(32)
+    with _ENV_FILE.open("a") as f:
+        f.write(f"FLASK_SECRET_KEY={key}\n")
+    return key
 
 
 def get_repo() -> Repository:
@@ -31,7 +55,7 @@ def close_db(exc: BaseException | None = None) -> None:
 
 def create_app() -> Flask:
     app = Flask(__name__)
-    app.secret_key = os.environ.get("FLASK_SECRET_KEY", "physcom-dev-key")
+    app.secret_key = _load_or_generate_secret_key()
 
     app.teardown_appcontext(close_db)
 
@@ -57,4 +81,4 @@ def create_app() -> Flask:
 def run() -> None:
     """Entry point for `physcom-web` script."""
     app = create_app()
-    app.run(debug=True, port=int(os.environ.get("PORT", "5000")))
+    app.run(host="0.0.0.0", debug=True, port=int(os.environ.get("PORT", "5000")))

src/physcom_web/routes/domains.py

@@ -1,9 +1,10 @@
-"""Domain listing routes."""
+"""Domain CRUD routes."""
 
 from __future__ import annotations
 
-from flask import Blueprint, render_template
+from flask import Blueprint, flash, redirect, render_template, request, url_for
 
+from physcom.models.domain import Domain, MetricBound
 from physcom_web.app import get_repo
 
 bp = Blueprint("domains", __name__, url_prefix="/domains")
@@ -14,3 +15,100 @@ def domain_list():
     repo = get_repo()
     domains = repo.list_domains()
     return render_template("domains/list.html", domains=domains)
+
+
+@bp.route("/new", methods=["GET", "POST"])
+def domain_new():
+    repo = get_repo()
+    if request.method == "POST":
+        name = request.form["name"].strip()
+        description = request.form.get("description", "").strip()
+        if not name:
+            flash("Name is required.", "error")
+            return render_template("domains/form.html")
+        domain = repo.add_domain(Domain(name=name, description=description))
+        flash(f"Domain '{name}' created.", "success")
+        return redirect(url_for("domains.domain_detail", domain_id=domain.id))
+    return render_template("domains/form.html")
+
+
+@bp.route("/<int:domain_id>", methods=["GET", "POST"])
+def domain_detail(domain_id: int):
+    repo = get_repo()
+    domain = repo.get_domain_by_id(domain_id)
+    if not domain:
+        flash("Domain not found.", "error")
+        return redirect(url_for("domains.domain_list"))
+    if request.method == "POST":
+        name = request.form["name"].strip()
+        description = request.form.get("description", "").strip()
+        if not name:
+            flash("Name is required.", "error")
+        else:
+            repo.update_domain(domain_id, name, description)
+            flash(f"Domain '{name}' updated.", "success")
+            domain = repo.get_domain_by_id(domain_id)
+    return render_template("domains/detail.html", domain=domain)
+
+
+@bp.route("/<int:domain_id>/delete", methods=["POST"])
+def domain_delete(domain_id: int):
+    repo = get_repo()
+    domain = repo.get_domain_by_id(domain_id)
+    if domain:
+        repo.delete_domain(domain_id)
+        flash(f"Domain '{domain.name}' deleted.", "success")
+    return redirect(url_for("domains.domain_list"))
+
+
+# ── Metric bound CRUD (HTMX partials) ────────────────────────
+
+
+@bp.route("/<int:domain_id>/metrics/add", methods=["POST"])
+def metric_add(domain_id: int):
+    repo = get_repo()
+    metric_name = request.form["metric_name"].strip()
+    unit = request.form.get("unit", "").strip()
+    try:
+        weight = float(request.form.get("weight", "1.0"))
+        norm_min = float(request.form.get("norm_min", "0.0"))
+        norm_max = float(request.form.get("norm_max", "1.0"))
+    except ValueError:
+        flash("Weight, norm_min, and norm_max must be numbers.", "error")
+        domain = repo.get_domain_by_id(domain_id)
+        return render_template("domains/_metrics_table.html", domain=domain)
+    if not metric_name:
+        flash("Metric name is required.", "error")
+    else:
+        mb = MetricBound(metric_name=metric_name, weight=weight, norm_min=norm_min, norm_max=norm_max, unit=unit)
+        repo.add_metric_bound(domain_id, mb)
+        flash("Metric added.", "success")
+    domain = repo.get_domain_by_id(domain_id)
+    return render_template("domains/_metrics_table.html", domain=domain)
+
+
+@bp.route("/<int:domain_id>/metrics/<int:metric_id>/edit", methods=["POST"])
+def metric_edit(domain_id: int, metric_id: int):
+    repo = get_repo()
+    try:
+        weight = float(request.form.get("weight", "1.0"))
+        norm_min = float(request.form.get("norm_min", "0.0"))
+        norm_max = float(request.form.get("norm_max", "1.0"))
+    except ValueError:
+        flash("Weight, norm_min, and norm_max must be numbers.", "error")
+        domain = repo.get_domain_by_id(domain_id)
+        return render_template("domains/_metrics_table.html", domain=domain)
+    unit = request.form.get("unit", "").strip()
+    repo.update_metric_bound(domain_id, metric_id, weight, norm_min, norm_max, unit)
+    flash("Metric updated.", "success")
+    domain = repo.get_domain_by_id(domain_id)
+    return render_template("domains/_metrics_table.html", domain=domain)
+
+
+@bp.route("/<int:domain_id>/metrics/<int:metric_id>/delete", methods=["POST"])
+def metric_delete(domain_id: int, metric_id: int):
+    repo = get_repo()
+    repo.delete_metric_bound(domain_id, metric_id)
+    flash("Metric removed.", "success")
+    domain = repo.get_domain_by_id(domain_id)
+    return render_template("domains/_metrics_table.html", domain=domain)

src/physcom_web/routes/pipeline.py

@@ -151,7 +151,7 @@ def run_cancel(run_id: int):
     """Set a running pipeline to cancelled. The pipeline checks this flag."""
     repo = get_repo()
     run = repo.get_pipeline_run(run_id)
-    if run and run["status"] == "running":
+    if run and run["status"] in ("running", "rate_limited"):
         repo.update_pipeline_run(run_id, status="cancelled")
         flash(f"Run #{run_id} cancellation requested.", "info")
     return redirect(url_for("pipeline.pipeline_form"))

src/physcom_web/routes/results.py

@@ -65,6 +65,18 @@ def result_detail(domain_name: str, combo_id: int):
     )
 
 
+@bp.route("/<domain_name>/reset", methods=["POST"])
+def reset_results(domain_name: str):
+    repo = get_repo()
+    domain = repo.get_domain(domain_name)
+    if not domain:
+        flash(f"Domain '{domain_name}' not found.", "error")
+        return redirect(url_for("results.results_index"))
+    count = repo.reset_domain_results(domain_name)
+    flash(f"Reset {count} result rows for '{domain_name}'. Ready to re-run.", "success")
+    return redirect(url_for("results.results_domain", domain_name=domain_name))
+
+
 @bp.route("/<domain_name>/<int:combo_id>/review", methods=["POST"])
 def submit_review(domain_name: str, combo_id: int):
     repo = get_repo()
@@ -84,6 +96,7 @@ def submit_review(domain_name: str, combo_id: int):
         combo_id, domain.id, composite_score,
         pass_reached=5,
         novelty_flag=novelty_flag,
+        llm_review=existing.get("llm_review") if existing else None,
         human_notes=human_notes,
     )
     repo.update_combination_status(combo_id, "reviewed")

src/physcom_web/static/style.css

@@ -81,6 +81,7 @@ table.compact th, table.compact td { padding: 0.25rem 0.4rem; font-size: 0.85rem
 .badge-valid { background: #dcfce7; color: #166534; }
 .badge-blocked { background: #fee2e2; color: #991b1b; }
 .badge-scored { background: #dbeafe; color: #1e40af; }
+.badge-llm_reviewed { background: #e0f2fe; color: #0369a1; }
 .badge-reviewed { background: #f3e8ff; color: #6b21a8; }
 .badge-pending { background: #fef3c7; color: #92400e; }
 
@@ -171,6 +172,7 @@ dd { font-size: 0.9rem; }
 .badge-completed { background: #dcfce7; color: #166534; }
 .badge-failed { background: #fee2e2; color: #991b1b; }
 .badge-cancelled { background: #fef3c7; color: #92400e; }
+.badge-rate_limited { background: #ffedd5; color: #9a3412; }
 
 .run-status { padding: 0.25rem 0; }
 .run-status-header { display: flex; align-items: center; gap: 0.5rem; margin-bottom: 0.5rem; }

src/physcom_web/templates/domains/_metrics_table.html

@@ -0,0 +1,68 @@
+<table id="metrics-table">
+  <thead>
+    <tr>
+      <th>Metric</th>
+      <th>Unit</th>
+      <th>Weight</th>
+      <th>Norm Min</th>
+      <th>Norm Max</th>
+      <th></th>
+    </tr>
+  </thead>
+  <tbody>
+    {% for mb in domain.metric_bounds %}
+    <tr>
+      <td>{{ mb.metric_name }}</td>
+      <td>{{ mb.unit or '—' }}</td>
+      <td>{{ mb.weight }}</td>
+      <td>{{ mb.norm_min }}</td>
+      <td>{{ mb.norm_max }}</td>
+      <td class="actions">
+        <button class="btn btn-sm"
+                onclick="this.closest('tr').nextElementSibling.style.display='table-row'; this.closest('tr').style.display='none'">
+          Edit
+        </button>
+        <form method="post"
+              hx-post="{{ url_for('domains.metric_delete', domain_id=domain.id, metric_id=mb.metric_id) }}"
+              hx-target="#metrics-section" hx-swap="innerHTML"
+              class="inline-form">
+          <button type="submit" class="btn btn-sm btn-danger">Del</button>
+        </form>
+      </td>
+    </tr>
+    <tr class="edit-row" style="display:none">
+      <form method="post"
+            hx-post="{{ url_for('domains.metric_edit', domain_id=domain.id, metric_id=mb.metric_id) }}"
+            hx-target="#metrics-section" hx-swap="innerHTML">
+        <td>{{ mb.metric_name }}</td>
+        <td><input name="unit" value="{{ mb.unit or '' }}"></td>
+        <td><input name="weight" type="number" step="any" value="{{ mb.weight }}" required></td>
+        <td><input name="norm_min" type="number" step="any" value="{{ mb.norm_min }}" required></td>
+        <td><input name="norm_max" type="number" step="any" value="{{ mb.norm_max }}" required></td>
+        <td>
+          <button type="submit" class="btn btn-sm btn-primary">Save</button>
+          <button type="button" class="btn btn-sm"
+                  onclick="this.closest('tr').style.display='none'; this.closest('tr').previousElementSibling.style.display=''">
+            Cancel
+          </button>
+        </td>
+      </form>
+    </tr>
+    {% endfor %}
+  </tbody>
+</table>
+
+<h3>Add Metric</h3>
+<form method="post"
+      hx-post="{{ url_for('domains.metric_add', domain_id=domain.id) }}"
+      hx-target="#metrics-section" hx-swap="innerHTML"
+      class="dep-add-form">
+  <div class="form-row">
+    <input name="metric_name" placeholder="metric name" required>
+    <input name="unit" placeholder="unit">
+    <input name="weight" type="number" step="any" placeholder="weight" value="1.0" required>
+    <input name="norm_min" type="number" step="any" placeholder="norm min" value="0.0" required>
+    <input name="norm_max" type="number" step="any" placeholder="norm max" value="1.0" required>
+    <button type="submit" class="btn btn-primary">Add</button>
+  </div>
+</form>

src/physcom_web/templates/domains/detail.html

@@ -0,0 +1,36 @@
+{% extends "base.html" %}
+{% block title %}{{ domain.name }} — PhysCom{% endblock %}
+
+{% block content %}
+<div class="page-header">
+  <h1>{{ domain.name }}</h1>
+  <form method="post" action="{{ url_for('domains.domain_delete', domain_id=domain.id) }}" class="inline-form"
+        onsubmit="return confirm('Delete this domain and all its pipeline runs and results?')">
+    <button type="submit" class="btn btn-danger">Delete Domain</button>
+  </form>
+</div>
+
+<div class="card">
+  <form method="post" action="{{ url_for('domains.domain_detail', domain_id=domain.id) }}">
+    <div class="form-row">
+      <div class="form-group" style="flex:1">
+        <label for="name">Name</label>
+        <input type="text" id="name" name="name" value="{{ domain.name }}" required>
+      </div>
+      <div class="form-group" style="flex:2">
+        <label for="description">Description</label>
+        <input type="text" id="description" name="description" value="{{ domain.description }}">
+      </div>
+      <div class="form-group" style="align-self:end">
+        <button type="submit" class="btn btn-primary">Save</button>
+      </div>
+    </div>
+  </form>
+</div>
+
+<h2>Metrics</h2>
+
+<div id="metrics-section">
+  {% include "domains/_metrics_table.html" %}
+</div>
+{% endblock %}

src/physcom_web/templates/domains/form.html

@@ -0,0 +1,24 @@
+{% extends "base.html" %}
+{% block title %}New Domain — PhysCom{% endblock %}
+
+{% block content %}
+<h1>New Domain</h1>
+
+<div class="card">
+  <form method="post">
+    <div class="form-group">
+      <label for="name">Name</label>
+      <input type="text" id="name" name="name"
+             value="{{ request.form.get('name', '') }}" required placeholder="e.g. Urban Transit">
+    </div>
+    <div class="form-group">
+      <label for="description">Description</label>
+      <textarea id="description" name="description" rows="3">{{ request.form.get('description', '') }}</textarea>
+    </div>
+    <div class="form-actions">
+      <button type="submit" class="btn btn-primary">Create</button>
+      <a href="{{ url_for('domains.domain_list') }}" class="btn">Cancel</a>
+    </div>
+  </form>
+</div>
+{% endblock %}

src/physcom_web/templates/domains/list.html

@@ -2,14 +2,17 @@
 {% block title %}Domains — PhysCom{% endblock %}
 
 {% block content %}
+<div class="page-header">
   <h1>Domains</h1>
+  <a href="{{ url_for('domains.domain_new') }}" class="btn btn-primary">New Domain</a>
+</div>
 
 {% if not domains %}
-<p class="empty">No domains found. Seed data via CLI first.</p>
+<p class="empty">No domains found. <a href="{{ url_for('domains.domain_new') }}">Create one</a> or seed data via CLI.</p>
 {% else %}
   {% for d in domains %}
   <div class="card">
-    <h2>{{ d.name }}</h2>
+    <h2><a href="{{ url_for('domains.domain_detail', domain_id=d.id) }}">{{ d.name }}</a></h2>
     <p>{{ d.description }}</p>
     <table>
       <thead>

src/physcom_web/templates/pipeline/_run_status.html

@@ -1,6 +1,6 @@
 {# HTMX partial: live status for a single pipeline run #}
 <div class="run-status run-status-{{ run.status }}"
-     {% if run.status == 'running' or run.status == 'pending' %}
+     {% if run.status in ('running', 'pending', 'rate_limited') %}
      hx-get="{{ url_for('pipeline.run_status', run_id=run.id) }}"
      hx-trigger="every 2s"
      hx-swap="outerHTML"
@@ -65,8 +65,14 @@
   <div class="flash flash-error" style="margin-top:0.5rem">{{ run.error_message }}</div>
   {% endif %}
 
+  {% if run.status == 'rate_limited' %}
+  <div class="flash flash-info" style="margin-top:0.5rem">
+    Rate limited — waiting for quota to refresh, then resuming automatically.
+  </div>
+  {% endif %}
+
   <div class="run-status-actions">
-    {% if run.status == 'running' %}
+    {% if run.status in ('running', 'rate_limited') %}
     <form method="post" action="{{ url_for('pipeline.run_cancel', run_id=run.id) }}" class="inline-form">
       <button type="submit" class="btn btn-danger btn-sm">Cancel</button>
     </form>

src/physcom_web/templates/pipeline/run.html

@@ -74,7 +74,7 @@
   </form>
 </div>
 
-{% set active_runs = runs | selectattr('status', 'in', ['pending', 'running']) | list %}
+{% set active_runs = runs | selectattr('status', 'in', ['pending', 'running', 'rate_limited']) | list %}
 {% if active_runs %}
 <h2>Active Runs</h2>
 {% for run in active_runs %}

src/physcom_web/templates/results/list.html

@@ -15,7 +15,14 @@
 
 {% if domain and results is not none %}
 <div class="card">
+  <div class="page-header">
     <h2>{{ domain.name }} <span class="subtitle">{{ domain.description }}</span></h2>
+    <form method="post" action="{{ url_for('results.reset_results', domain_name=domain.name) }}"
+          class="inline-form"
+          onsubmit="return confirm('Delete all results for {{ domain.name }}? This cannot be undone.')">
+      <button type="submit" class="btn btn-danger btn-sm">Reset results</button>
+    </form>
+  </div>
 
   {% if statuses %}
   <div class="filter-row">
@@ -53,7 +60,7 @@
       {% for r in results %}
       <tr>
         <td>{{ loop.index }}</td>
-        <td class="score-cell">{{ "%.4f"|format(r.composite_score) if r.composite_score else '—' }}</td>
+        <td class="score-cell">{{ "%.4f"|format(r.composite_score) if r.composite_score is not none else '—' }}</td>
         <td>{{ r.combination.entities|map(attribute='name')|join(' + ') }}</td>
         <td><span class="badge badge-{{ r.combination.status }}">{{ r.combination.status }}</span></td>
         <td class="block-reason-cell">

tests/test_constraint_resolver.py

@@ -119,3 +119,67 @@ def test_hydrogen_bicycle_valid(bicycle, hydrogen_engine):
     # This is actually a borderline case — let's just verify no hard physics blocks
     range_blocks = [v for v in result.violations if "mutually exclusive" in v or "atmosphere" in v]
     assert len(range_blocks) == 0
+
+
+def test_energy_density_deficit_blocks():
+    """A platform needing 2000 Wh/kg paired with a 200 Wh/kg battery → blocked."""
+    platform = Entity(
+        name="Spaceship", dimension="platform",
+        dependencies=[
+            Dependency("physical", "energy_density_wh_kg", "2000", "Wh/kg", "range_min"),
+        ],
+    )
+    power = Entity(
+        name="Battery", dimension="power_source",
+        dependencies=[
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
+        ],
+    )
+    resolver = ConstraintResolver()
+    combo = Combination(entities=[platform, power])
+    result = resolver.resolve(combo)
+    assert result.status == "blocked"
+    assert any("energy density deficit" in v for v in result.violations)
+
+
+def test_energy_density_under_density_warning():
+    """A platform needing 400 Wh/kg paired with a 200 Wh/kg battery → conditional."""
+    platform = Entity(
+        name="Airplane", dimension="platform",
+        dependencies=[
+            Dependency("physical", "energy_density_wh_kg", "400", "Wh/kg", "range_min"),
+        ],
+    )
+    power = Entity(
+        name="Battery", dimension="power_source",
+        dependencies=[
+            Dependency("physical", "energy_density_wh_kg", "200", "Wh/kg", "provides"),
+        ],
+    )
+    resolver = ConstraintResolver()
+    combo = Combination(entities=[platform, power])
+    result = resolver.resolve(combo)
+    assert result.status != "blocked"
+    assert any("under-density" in w for w in result.warnings)
+
+
+def test_energy_density_no_constraint_if_no_provider():
+    """A platform with energy density requirement but no declared provider → no violation."""
+    platform = Entity(
+        name="Spaceship", dimension="platform",
+        dependencies=[
+            Dependency("physical", "energy_density_wh_kg", "2000", "Wh/kg", "range_min"),
+        ],
+    )
+    # Solar Sail-style: no energy_density_wh_kg declared
+    power = Entity(
+        name="Solar Sail", dimension="power_source",
+        dependencies=[
+            Dependency("force", "force_output_watts", "1", "watts", "provides"),
+        ],
+    )
+    resolver = ConstraintResolver()
+    combo = Combination(entities=[platform, power])
+    result = resolver.resolve(combo)
+    density_violations = [v for v in result.violations if "energy density" in v]
+    assert len(density_violations) == 0